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    Author Archives: biomembers

    Data visualization and analysis, Heatmap
    Dos and don’ts for a heatmap color scale
    by biomembers • September 24, 2018 September 21, 2020

    Heatmaps. We see them all over the scientific journals — the shading matrices that convey meaningful stories. Wanna interpret gene expressions? Draw a heatmap. Gotta examine the correlation among variables? Get it done with a heatmap. It seems that the shading has breathed such life into those cheerless matrices of […]

    Data visualization and analysis, Venn diagrams
    Proportional Venn diagram in 1 minute with BioVinci
    by biomembers • May 11, 2018 November 8, 2018

    Venn diagram is an excellent tool to visualize the relationship among sets. Ideally, the sizes of the circles and their overlapping area should be proportional to the relationship they convey. It is, however, quite a challenge to create a proportional Venn diagram. No worries: With BioVinci, you can get this job done […]

    Data visualization and analysis, Heatmap
    How to build a hierarchical clustering heatmap with BioVinci?
    by biomembers • May 8, 2018 November 14, 2018

    Heatmap, heatmap everywhere. They are an intuitive way to visualize information from complex data. You see them showing gene expression, phylogenetic distance, metabolomic profiles, and a whole lot more. In this tutorial, we will show you how to perform hierarchical clustering and produce a heatmap with your data using BioVinci. It’s […]

    Data visualization and analysis
    Log base 2 or e or 10?
    by biomembers • April 26, 2018 November 9, 2020

    When your data span a large range, the graphs tend to get ugly. Values either crowd at the bottom or spread out at the top — a problem called poor resolution. The rate of changes is hard to display, since the graph usually has a very long tail, or a very […]

    Data visualization and analysis
    Good chart, bad chart
    by biomembers • April 26, 2018 November 14, 2018

    When it comes to presenting data, visuals are your friend, or so we all heard. Tables are better than large blocks of text and numbers. Graphs and charts are better than tables. Then it becomes irresistible to enliven your graphs and charts with colors, patterns, grid lines, labels, and the […]

    Data visualization and analysis
    BioVinci: a drag-and-drop tool for data visualization
    by biomembers • April 16, 2018 November 28, 2018

    Massive amounts of biological data are emerging everyday, waiting to be deciphered. There is almost no way to analyze and visualize them without writing complex code. As a biologist, you may not find it an optimal use of your time to develop such code from scratch. That is why we […]

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