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Tag Archives: subclustering seurat

October 25, 2019 By biomembers

A sub-clustering tutorial: explore T cell subsets with BioTuring Single-cell Browser

Single Cell Analysis, Single-cell RNA-seq tutorials

Single-cell RNA sequencing technologies have enabled many exciting discoveries of novel cell types and sub-types, such as the rosehip neurons (Boldog et al., 2018), disease-associated microglia (Keren-Shaul et al., 2017) and lipid-associated macrophages (Jaitin, Adlung, Thaiss, Weiner and Li et al., 2019). While sub-clustering cell populations is essential to find […]

September 26, 2019 By biomembers

A new tool to interactively visualize single-cell objects (Seurat, Scanpy, SingleCellExperiments, …)

Single Cell Analysis, Single-cell RNA-seq tutorials

Seurat (Butler et. al 2018) and Scanpy (Wolf et. al 2018) are two great analytics tools for single-cell RNA-seq data due to their straightforward and simple workflow. However, for those who want to interact with their data, and flexibly select a cell population outside a cluster for analysis, it is […]