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Category Archives: BioTuring Cellpedia

June 2, 2022 By Minh-Hien Tran

The Basics of DESeq2 – A Powerful Tool in Differential Expression Analysis for Single-cell RNA-Seq

BioTuring Cellpedia, Data visualization and analysis, RNA-seq data analysis, Single Cell Analysis, Single-cell RNA-seq tutorials

Differential expression analysis is a common step in a Single-cell RNA-Seq data analysis workflow. In our previous post, we have given an overview of differential expression analysis tools in single-cell RNA-Seq. This time, we’d like to discuss a frequently used tool – DESeq2 (Love, Huber, & Anders, 2014). According to […]

December 25, 2019 By biomembers

How to explore “Characterizing smoking-induced transcriptional heterogeneity in the human bronchial epithelium at single-cell resolution” (Duclos et. al 2019) | BioTuring Cellpedia

BioTuring Cellpedia, Single Cell Analysis, Single-cell RNA-seq tutorials

Multiple studies have shown smoking’s effects on the human bronchi. However, few have characterized its precise impact at cellular resolution. Published recently on Science Advances, a study by Duclos and colleagues has employed single-cell RNA sequencing into exploring the cellular changes in the human bronchial epithelium between current and never […]

December 18, 2019 By biomembers

Exploring “Dysfunctional CD8 T Cells Form a Proliferative, Dynamically Regulated Compartment within Human Melanoma” (Li et al., 2018) | BioTuring Cellpedia

BioTuring Cellpedia, Single Cell Analysis

Welcome to our new BioTuring Cellpedia series! We are excited to introduce a new blog series that provides you with an overview of some interesting datasets indexed in BioTuring Browser public repository, a platform for instant access and reanalysis of published single-cell RNA-seq data. Details on their experimental designs and […]