scRNA-seq data analysis Archives - BioTuring's Blog
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Tag Archives: scRNA-seq data analysis

Zooming in the intratumoral heterogeneity of liver cancer with BBrowser single cell database
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intratumoral heterogeneity - liver cancer cell composition

Introduction¬† Why are tumors so resilient against available cancer therapies? One answer lies in intratumoral heterogeneity.¬† Intratumoral heterogeneity describes the diversity in tumor cell populations. Cancer cells exhibit startling distinctions in their types, shape, metabolic activities, transcriptomic profiles, and more. The causes of intratumoral heterogeneity are both heritable (clonal expansion […]

A new tool to interactively visualize single-cell objects (Seurat, Scanpy, SingleCellExperiments, …)
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Seurat (Butler et. al 2018) and Scanpy (Wolf et. al 2018) are two great analytics tools for single-cell RNA-seq data due to their straightforward and simple workflow. However, for those who want to interact with their data, and flexibly select a cell population outside a cluster for analysis, it is […]